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Citations

Below is a list of publications that used our Genomic Technologies Facility:

• Brooks III L, J Strable, X Zhang, K Ohtsu, R Zhou, A Sarkar, S Hargreaves, RJ Elshire, D Eudy, T Pawlowska, D Ware, D Janick-Buckner, B Buckner, MC Timmermans, PS Schnable, D Nettleton, MJ Scanlon (2009) Microdissection of Shoot Meristem Functional Domains. PLoS Genetics, 5(5): e1000476. [Full Text PDF]
  
• Carruthers MD, FC Minion (2009) Transcriptome analysis of Escherichia coli O157:H7 EDL933 during heat shock. FEMS Microbiol Lett, 295(1): 96-102. [Full Text PDF]
  
• Du Z, X Zhao, N Vukasinovic, F Rodriguez, AC Clutter, MF Rothschild (2009) Association and Haplotype Analyses of Positional Candidate Genes in Five Genomic Regions Linked to Scrotal Hernia in Commercial Pig Lines. PLoS One, 4(3): e4837. [Full Text PDF]
  
• Fan B, SK Onteru, BE Mote, T Serenius, KJ Stalder, MF Rothschild (2009) Large-scale association study for structural soundness and leg locomotion traits in the pig. Genet Sel Evol, 41(1): 14. [Full Text PDF]
  
• Fan B, SK Onteru, MT Nikkilä, KJ Stalder, MF Rothschild (2009) The COL9A1 gene is associated with longissimus dorsi muscle area in the pig. Anim Genet. [Full Text PDF]
  
• Sow F, J Gallup, R Sacco, M Ackermann (2009) Laser Capture Microdissection Revisited as a Tool for Transcriptomic Analysis: Application of an Excel-Based qPCR Preparation Software (PREXCEL-Q). Int'l Journal of Biomedical Science, 5(2): 110-119.
  
• Onteru SK, B Fan, MF Rothschild (2008) SNP detection and comparative linkage mapping of 66 bone-related genes in the pig. Cytogenet Genome Res, 122(2): 122-131. [Full Text PDF]
  
• Shimizu R, J Ji, E Kelsey, K Ohtsu, PS Schnable, MJ Scanlon (2008) Tissue Specificity and Evolution of Meristematic WOX3 Function. Plant Phys, 149(2): 841-850. [Full Text PDF]
  
• Guo B, Y Wang, F Shi, Y Barton, P Plummer, DL Reynolds, D Nettleton, T Grinnage-Pulley, J Lin, Q Zhang (2008) CmeR Functions as a Pleiotropic Regulator and Is Required for Optimal Colonization of Campylobacter jejuni In Vivo. J Bacteriol, 190(6): 1879-1890. [Full Text PDF]
  
• Guo H, L Li, H Ye, X Yu, A Algreen, Y Yi (2008) Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana. PNAS, 106(18): 7648-7653. [Full Text PDF]
  
• Han J, O Sahin, Y Barton, Q Zhang (2008) Key Role of Mfd in the Development of Fluoroquinolone Resistance in Campylobacter jejuni. PLoS Pathogens, 4(6): e1000083. [Full Text PDF]
  
• Jung K, C Dardick, LE Bartley, P Cao, J Phetsom, P Canlas, Y Seo, M Shultz, S Ouyang, Q Yuan, BC Frank, E Ly, L Zheng, Y Jia, AP Hsia, K An, HH Chou, D Rocke, GC Lee, PS Schnable, G An, CR Buell, PC Ronald1 (2008) Refinement of Light-Responsive Transcript Lists Using Rice Oligonucleotide Arrays: Evaluation of Gene-Redundancy. PLoS One, 3(10): e3337. [Full Text PDF]
  
• Li L, X Yu, A Thompson, M Guo, S Yoshida, T Asami, J Chory, Y Yin (2008) Arabidopsis MYB30 is a direct target of BES1 and cooperates with BES1 to regulate brassinosteroid-induced gene expression. Plant Journal, 58(2): 275-286. [Full Text PDF]
  
• Oneal MJ, ER Shafer, ML Madsen, FC Minion (2008) Global transcriptional analysis of Mycoplasma hyopneumoniae following exposure to norepinephrine. Microbiology, 154: 2581-2588. [Full Text PDF]
  
• Puttamreddy S, MD Carruthers, MF Madsen, FC Minion (2008) Transcriptome Analysis of Organisms with Food Safety Relevance. Foodborne Pathogens and Disease, 5(4): 517-529. [Full Text PDF]
  
• Skibbe DS, X Wang, LA Borsuk, DA Ashlock, D Nettleton, PS Schnable (2008) Floret-specific differences in gene expression and support for the hypothesis that tapetal degeneration of Zea mays L. occurs via programmed cell death. Journal of Genetics and Genomics, 35(10): 603-616. [Full Text PDF]
  
• Strable J, LA Borsuk, D Nettleton, PS Schnable, EE Irish (2008) Microarray analysis of vegetative phase change in maize. Plant Journal, 56(6): 1045-1057. [Full Text PDF]
  
• Yun J, B Jeon, Y Barton, P Plummer, Q Zhang, S Ryu (2008) Role of the DksA-Like Protein in the Pathogenesis and Diverse Metabolic Activity of Campylobacter jejuni. J Bacteriol, 190(13): 4512-4520. [Full Text PDF]
  
• Zhao X, Z Du, N Vukasinovic, F Rodriguez, AC Clutter, MF Rothschild (2008) Biological candidate gene analyses identify that HOXA10 and MMP2 are associated with scrotal hernias in pigs. Am J Vet Res, in press.
  
• Jaipuri FA, BY Collet, NL Pohl (2008) Synthesis and Quantitative Evaluation of Glycero-D-manno-heptose Binding to Concanavalin A by Fluorous-Tag Assistance. Angewandte Chemie, 120(9): 1731-1734. [Full Text PDF]
  
• Madsen ML, S Puttamreddy, EL Thacker, MD Carruthers, FC Minion (2008) Transcriptome Changes in Mycoplasma hyopneumoniae during Infection. Infect Immun., 76(2): 658-663. [Full Text PDF]
  
• Ohtsu K, M Smith, SJ Emrich, LA Borsuk, R Zhou, T Chen, X Zhang, M Timmermans, J Beck, B Buckner, D Janick-Buckner, D Nettleton, MJ Scanlon, PS Schnable (2007) Global gene expression analysis of the shoot apical meristem of maize (Zea mays L.). Plant Journal, 52(3): 391-404. [Full Text PDF]
  
• O'Rourke JA, DV Charlson, DO Gonzales, LO Vodkin, MA Graham, SR Cianzio, MA Grusak, RC Shoemaker (2007) Microarray analysis of iron deficiency chlorosis in near-isogenic soybean lines. BMC Genomics, 8: 476. [Full Text PDF]
  
• O'Rourke JA, MA Graham, L Vodkin, DO Gonzales, SR Cianzio, RC Shoemaker (2007) Recovering from iron deficiency chlorosis in near-isogenic soybeans: A microarray study. Plant Physiol Biochem., 45(5): 287-292. [Full Text PDF]
  
• Zhou J, SJ Lamont (2007) Global gene expression profile after Salmonella enterica Serovar enteritidis challenge in two F8 advanced intercross chicken lines. Cytogenet Genome Res, 117: 131-138. [Full Text PDF]
  
• Schafer ER, MJ Oneal, ML Madsen, FC Minion (2007) Global transcriptional analysis of Mycoplasma hyopneumoniae following exposure to hydrogen peroxide. Microbiology, 153(11): 3785-3790. [Full Text PDF]
  
• Zhang X, S Medi, L Borsuk, DS Nettleton, B Buckner, D Janick-Buckner, J Beck, M Timmermans, PS Schnable, MJ Scanlon (2007) Laser Microdissection of Narrow Sheath Mutant Maize Uncovers Novel Gene Expression in the Shoot Apical Meristem. PLoS Genetics, 3(6): e101. [Full Text PDF]
  
• Buckner B, J Beck, KF Browning, AE Fritz, E Hoxha, LD Grantham, ZN Kamvar, AN Lough, O Nikolova, PS Schnable, MJ Scanlon, D Janick-Buckner (2007) Involving undergraduates in the annotation and analysis of global gene expression studies: creation of a maize shoot apical meristem expression database. Genetics, 176(2): 741-747. [Full Text PDF]
  
• Travers SE, MD Smith, J Bai, SH Hulbert, JE Leach, PS Schnable, AK Knapp, GA Milliken, PA Fay, A Saleh, KA Garrett (2007) Ecological genomics: making the leap from model systems in the lab to native populations in the field. Front Ecol Environ, 5(1): 19-24.
  
• Shi C, A Użariwska, M Ouzunova, M Landbeck, G Wenzel, T Lübberstedt (2007) Identification of candidate genes associated with cell wall digestibility and eQTL (expression quantitative trait loci) analysis in a Flint x Flint maize recombinant inbred line population. BioMed Central, 8: 22-22. [Full Text PDF]
  
• Madsen ML, D Nettleton, EL Thacker, R Edwards, FC Minion (2006) Transcriptional Profiling of Mycoplasma hyopneumoniae during Heat Shock Using Microarrays. Infect Immun., 74(1): 160-166. [Full Text PDF]
  
• Madsen ML, D Nettleton, EL Thacker, FC Minion (2006) Transcriptional profiling of Mycoplasma hyopneumoniae during iron depletion using microarrays. Microbiology, 152(4): 937-944. [Full Text PDF]
  
• Użariwska A, B Keller, HP Piepho, G Schwarz, C Ingvardsen, G Wenzel, T Lübberstedt (2006) Comparative expression profiling in meristems of inbred-hybrid triplets of maize based on morphological investigations of heterosis for plant height. Plant Mol Biol, 63(1): 21-34. [Full Text PDF]
  
• Shi C, G Koch, M Ouzunova, G Wenzel, I Zein, T Lübberstedt (2006) Comparing of maize brown-midrib isogenic lines by cellular UV-microspectrophotometry and comparative transcript profiling. Plant Mol Biol, 62(4-5): 697-714. [Full Text PDF]
  
• Che P, TM Love, BR Frame, K Wang, AL Carriquiry, SH Howell (2006) Gene expression patterns during somatic embryo development and germination in maize Hi II Callus cultures. Plant Mol Biol, 62(1-2): 1-14. [Full Text PDF]
  
• Swanson-Wagner RA, Y Jia, R DeCook, LA Borsuk, D Nettleton, PS Schnable (2006) All possible modes of gene action are observed in a global comparison of gene expression in a maize F₁ hybrid and its inbred parents. Proceedings National Academy Science, 103(18): 6805-6810. [Full Text PDF]
  
• Skibbe DS, X Wang, X Zhao, LA Borsuk, D Nettleton, PS Schnable (2006) Scanning microarrays at multiple intensities enhances discovery of differentially expressed genes. Bioinformatics, 22(15): 1863-1870. [Full Text PDF]
  
• Zhao SH, D Kuhar, JK Lunney, H Dawson, C Guidry, JJ Uthe, SM Bearson, J Recknor, D Nettleton, CK Tuggle (2006) Gene expression profiling in Salmonella Choleraesuis infected porcine lung using a long oligonucleotide microarray. Mamalian Genome, 17: 779-789.
  
• Woll K, LA Borsuk, H Stransky, D Nettleton, PS Schnable, F Hochholdinger (2005) Isolation, characterization, and pericycle-specific transcriptome analyses of the novel maize (Zea Mays L.) lateral and seminal root initiation mutant rum1. Plant Physiology, 139: 1255-1267. [Full Text PDF]
  
• Zhao SH, J Recknor, JK Lunney, D Nettleton, D Kuhar, S Orley, H Dawson, CK Tuggle (2005) Validating a first-generation porcine oligonucleotide microarray for transcriptional profiling in the pig. Genomics, 86: 618-625.
  
• Ko KS, FA Jaipuri, NL Pohl (2005) Fluorous-based carbohydrate microarrays. American Chemical Society, 127(38): 13162-13163. [Full Text PDF]
  
• Nakazono M, F Qiu, LA Borsuk, PS Schnable (2003) Laser capture microdissection, a tool for the global analysis of gene expression in specific plant cell types: Identification of genes differentially expressed in epidermal cells or vascular tissues of maize. Plant Cell, 15: 583-596. [Full Text PDF]